Publications 2001

 

  • Ambrus A, Bányai I, Weiss MS, Hilgenfeld R, Keresztessy Z, Muszbek L, Fésüs L. Calcium binding of transglutaminases: a 43Ca NMR study combined with surface polarity analysis. J Biomol Struct Dyn 2001, 19, 59-74. [PubMed]
  • Appel S, Reichwald K, Zimmermann W, Reis A, Rosenthal A, Hennies HC. Identification and localization of a new human myotubularin-related protein gene, mtmr8, on 8p22-p23. Genomics 2001, 75, 6-8. [PubMed]
  • Appel T, Wolff M, von Rheinbaben F, Heinzel M, Riesner D. Heat stability of prion rods and recombinant prion protein in water, lipid and lipid-water mixtures. J Gen Virol 2001, 82, 465-473. [PubMed]
  • Appel TR, Riesner D, von Rheinbaben F, Heinzel M. Oleochemical products derived from beef tallow or bone fat are safe regarding prions. Eur J Lipid Sci Technol 2001, 103, 713-721.
  • Aradhya S, Bardaro T, Galgóczy P, Yamagata T, Esposito T, Patlan H, Ciccodicola A, Munnich A, Kenwrick S, Platzer M, D'Urso M, Nelson DL. Multiple pathogenic and benign genomic rearrangements occur at a 35 kb duplication involving the NEMO and LAGE2 genes. Hum Mol Genet 2001, 10, 2557-2567. [PubMed]
  • Bauerschmidt C, Kremmer E, Nasheuer HP. Die Initiation der eukaryotischen DNA-Replikation - Ein Proteinnetzwerk wird entschlüsselt. Bioforum 2001, 24, 589-592.
  • Beuthan J, Hausmann M, Minet O, Perner B, Dressler C, Eberle HG. Approximative determination of the modulation transfer function of the scanning near field microscope using biological samples. Techn Messen 2001, 3, 127-130.
  • Böhm KJ, Stracke R, Mühlig P, Unger E. Motorprotein-driven unidirectional transport of micrometer-sized cargoes across isopolar microtubule arrays. Nanotechnology 2001, 12, 238-244.
  • Boudon V, Philippe C, Grandemenge A, Reichwald K, Jonveaux P. Deletion screening by fluorescence in situ hybridization in Rett syndrome patients. Ann Genet 2001, 44, 191-194.
  • Brandl M, Meyer M, Sühnel J. Quantum-chemical analysis of C-H...O and C-H...N interactions in RNA base pairs - H-bond versus anti-H-bond pattern. J Biomol Struct Dyn 2001, 18, 545-555. [PubMed]
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  • Brandl M, Weiss MS, Jabs A, Sühnel J, Hilgenfeld R. C-H...pi-interactions in proteins. J Mol Biol 2001, 307, 357-377. [PubMed]
  • Briese L, Hoffmann S, Friedrich U, Biesinger B, Willbold D. Sequence-specific 1H, 13C and 15N resonance assignments of lymphocyte specific kinase unique and SH3 domains. J Biomol NMR 2001, 19, 193-194. [PubMed]
  • Bruckmann A, Künkel W, Augsten K, Wetzker R, Eck R. The deletion of CaVPS34 in the human pathogenic yeast Candida albicans causes defects in vesicle-mediated protein sorting and nuclear segregation. Yeast 2001, 18, 343-353. [PubMed]
  • Burkhardt C, Zacharias M. Modelling ion binding to AA-platform motifs in RNA: a continuum solvent study including conformational adaptation. Nucleic Acids Res 2001, 29, 3910-3918. [PubMed]
  • Dehde S, Rohaly G, Schub O, Nasheuer HP, Bohn W, Chemnitz J, Deppert W, Dornreiter I. Two immunologically distinct human DNA polymerase -primase subpopulations are involved in cellular DNA replication. Mol Cell Biol 2001, 21, 2581-2593. [PubMed]
  • Dry K, Kenwrick S, Rosenthal A, Platzer M. The complete sequence of the human locus for NgCAM-related cell adhesion molecule reveals a novel alternative exon in chick and man and conserved genomic organization for the L1 subfamily. Gene 2001, 273, 115-122. [PubMed]
  • Dube A, Bock C, Bauer E, Kohli R, Gupta PK, Greulich KO. He-Ne laser irradiation protects B - lymphoblasts from UVA induced DNA damage. Radiat Environ Biophys 2001, 40, 77-82. [PubMed]
  • Engler A, Stangler T, Willbold D. Solution structure of human immunodeficiency virus type 1 Vpr(13-33) peptide in micelles. Eur J Biochem 2001, 268, 389-395. [PubMed]
  • Feig M, Zacharias M, Pettitt BM. Conformations of an adenine bulge in a DNA octamer and its influence on DNA structure from molecular dynamics simulations. Biophys J 2001, 81, 352-370. [PubMed]
  • Galgóczy P, Rosenthal A, Platzer M. Human-mouse comparative sequence analysis of the NEMO gene reveals an alternative promoter within the neighboring G6PD gene. Gene 2001, 271, 93-98. [PubMed]
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  • Glöckner G, Szafranski K, Winckler T, Dingermann T, Quail MA, Cox E, Eichinger L, Noegel AA, Rosenthal A. The complex repeats of Dictyostelium discoideum. Genome Res 2001, 11, 585-594. [PubMed]
  • Greulich KO. True single photons at room temperature. ChemPhysChem 2001, 2, 515-516.
  • Greulich KO, Thiel E. Single photon (light-) sources. Sing Mol 2001, 2, 5-12.
  • Groten JP, Feron VJ, Sühnel J. Toxicity of simple and complex mixtures. Trends Pharmacol Sci 2001, 22, 316-322. [PubMed]
  • Grunau C, Clark SJ, Rosenthal A. Bisulfite genomic sequencing: systematic investigation of critical experimental parameters. Nucleic Acids Res 2001, 29, E65-5. [PubMed]
  • Grunau C, Renault E, Rosenthal A, Roizes G. MethDB - a public database for DNA methylation data. Nucleic Acids Res 2001, 29, 270-274. [PubMed]
  • Hausmann M, Perner B, Rapp A, Scherthan H, Greulich KO. NSOM imaging of specifically labelled mitotic and meiotic chromosomes. Microsc Anal 2001, 71, 13-15.
  • Heise B, Leppert J, Wenschuh H, Ohlenschläger O, Görlach M, Ramachandran R. 2D relayed anisotropy correlation NMR: characterization of the 13C' chemical shift tensor orientation in the peptide plane of the dipeptide AibAib. J Biomol NMR 2001, 19, 167-179. [PubMed]
  • Hillisch A, Lorenz M, Diekmann S. Recent advances in FRET: distance determination in protein-DNA complexes. Curr Opin Struct Biol 2001, 11, 201-207. [PubMed]
  • Hoheisel G, Sack U, Hui DS, Huse K, Chan KS, Chan KK, Hartwig K, Schuster E, Scholz GH, Schauer J. Occurrence of matrix metalloproteinases and tissue inhibitors of metalloproteinases in tuberculous pleuritis. Tuberculosis (Edinb) 2001, 81, 203-209. [PubMed]
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  • Jia HP, Schutte BC, Schudy A, Linzmeier R, Guthmiller JM, Johnson GK, Tack BF, Mitros JP, Rosenthal A, Ganz T, McCray PB. Discovery of new human beta-defensins using a genomics-based approach. Gene 2001, 263, 211-218. [PubMed]
  • Jonas G, Hoffmann S, Willbold D. Binding of phage displayed HIV-1 Tat to TAR RNA in the presence of cyclin T1. J Biomed Sci 2001, 8, 430-436. [PubMed]
  • Kautz AR, Schneider A, Weisshart K, Geiger C, Nasheuer HP. Different regions of primase subunit p48 control mouse polyomavirus and simian virus 40 DNA replication in vitro. J Virol 2001, 75, 1751-1760. [PubMed]
  • Kautz AR, Weisshart K, Schneider A, Grosse F, Nasheuer HP. Amino acids 257 to 288 of Mouse p48 control the cooperation of polyomavirus large T antigen, replication protein A, and DNA polymerase-alpha-primase to synthesize DNA in vitro. J Virol 2001, 75, 8569-8578. [PubMed]
  • Köhler M, Diekmann S. Biomolecular nanotechnology. J Biotechnol 2001, 82, 1-2. [PubMed]
  • Lander ES, Linton LM, Birren B, Nusbaum C, Zody MC, Baldwin J, Devon K, Dewar K, Doyle M, FitzHugh W, Funke R, Gage D, Harris K, Heaford A, Howland J, Kann L, Lehoczky J, LeVine R, McEwan P, McKernan K, Meldrim J, Mesirov JP, Miranda C, Morris W, Naylor J, Raymond C, Rosetti M, Santos R, Sheridan A, Sougnez C, Stange-Thomann N, Stojanovic N, Subramanian A, Wyman D, Rogers J, Sulston J, Ainscough R, Beck S, Bentley D, Burton J, Clee C, Carter N, Coulson A, Deadman R, Deloukas P, Dunham A, Dunham I, Durbin R, French L, Grafham D, Gregory S, Hubbard T, Humphray S, Hunt A, Jones M, Lloyd C, McMurray A, Matthews L, Mercer S, Milne S, Mullikin JC, Mungall A, Plumb R, Ross M, Shownkeen R, Sims S, Waterston RH, Wilson RK, Hillier LW, McPherson JD, Marra MA, Mardis ER, Fulton LA, Chinwalla AT, Pepin KH, Gish WR, Chissoe SL, Wendl MC, Delehaunty KD, Miner TL, Delehaunty A, Kramer JB, Cook LL, Fulton RS, Johnson DL, Minx PJ, Clifton SW, Hawkins T, Branscomb E, Predki P, Richardson P, Wenning S, Slezak T, Doggett N, Cheng JF, Olsen A, Lucas S, Elkin C, Uberbacher E, Frazier M, Gibbs RA, Muzny DM, Scherer SE, Bouck JB, Sodergren EJ, Worley KC, Rives CM, Gorrell JH, Metzker ML, Naylor SL, Kucherlapati RS, Nelson DL, Weinstock GM, Sakaki Y, Fujiyama A, Hattori M, Yada T, Toyoda A, Itoh T, Kawagoe C, Watanabe H, Totoki Y, Taylor T, Weissenbach J, Heilig R, Saurin W, Artiguenave F, Brottier P, Bruls T, Pelletier E, Robert C, Wincker P, Smith DR, Doucette-Stamm L, Rubenfield M, Weinstock K, Lee HM, Dubois J, Rosenthal A, Platzer M, Nyakatura G, Taudien S, Rump A, Yang H, Yu J, Wang J, Huang G, Gu J, Hood L, Rowen L, Madan A, Qin S, Davis RW, Federspiel NA, Abola AP, Proctor MJ, Myers RM, Schmutz J, Dickson M, Grimwood J, Cox DR, Olson MV, Kaul R, Raymond C, Shimizu N, Kawasaki K, Minoshima S, Evans GA, Athanasiou M, Schultz R, Roe BA, Chen F, Pan H, Ramser J, Lehrach H, Reinhardt R, McCombie WR, de la Bastide M, Dedhia N, Blöcker H, Hornischer K, Nordsiek G, Agarwala R, Aravind L, Bailey JA, Bateman A, Batzoglou S, Birney E, Bork P, Brown DG, Burge CB, Cerutti L, Chen HC, Church D, Clamp M, Copley RR, Doerks T, Eddy SR, Eichler EE, Furey TS, Galagan J, Gilbert JG, Harmon C, Hayashizaki Y, Haussler D, Hermjakob H, Hokamp K, Jang W, Johnson LS, Jones TA, Kasif S, Kaspryzk A, Kennedy S, Kent WJ, Kitts P, Koonin EV, Korf I, Kulp D, Lancet D, Lowe TM, McLysaght A, Mikkelsen T, Moran JV, Mulder N, Pollara VJ, Ponting CP, Schuler G, Schultz J, Slater G, Smit AF, Stupka E, Szustakowski J, Thierry-Mieg D, Thierry-Mieg J, Wagner L, Wallis J, Wheeler R, Williams A, Wolf YI, Wolfe KH, Yang SP, Yeh RF, Collins F, Guyer MS, Peterson J, Felsenfeld A, Wetterstrand KA, Patrinos A, Morgan MJ, de Jong P, Catanese JJ, Osoegawa K, Shizuya H, Choi S, Chen YJ; International Human Genome Sequencing Consortium. Initial sequencing and analysis of the human genome. Nature 2001, 409, 860-921. [PubMed]
  • Leppert J, Heise B, Ramachandran R. Orientational information from TEDOR sidebands. Solid State Nucl Magn Reson 2001, 19, 1-18. [PubMed]
  • Lorenz M, Diekmann S. Quantitative distance information on protein-DNA-complexes determined in polyacrylamide gels by fluorescent resonance energy transfer. Electrophoresis 2001, 22, 990-998. [PubMed]
  • McPherson JD, Marra M, Hillier L, Waterston RH, Chinwalla A, Wallis J, Sekhon M, Wylie K, Mardis ER, Wilson RK, Fulton R, Kucaba TA, Wagner-McPherson C, Barbazuk WB, Gregory SG, Humphray SJ, French L, Evans RS, Bethel G, Whittaker A, Holden JL, McCann OT, Dunham A, Soderlund C, Scott CE, Bentley DR, Schuler G, Chen HC, Jang W, Green ED, Idol JR, Maduro VV, Montgomery KT, Lee E, Miller A, Emerling S, Kucherlapati , Gibbs R, Scherer S, Gorrell JH, Sodergren E, Clerc-Blankenburg K, Tabor P, Naylor S, Garcia D, de Jong PJ, Catanese JJ, Nowak N, Osoegawa K, Qin S, Rowen L, Madan A, Dors M, Hood L, Trask B, Friedman C, Massa H, Cheung VG, Kirsch IR, Reid T, Yonescu R, Weissenbach J, Bruls T, Heilig R, Branscomb E, Olsen A, Doggett N, Cheng JF, Hawkins T, Myers RM, Shang J, Ramirez L, Schmutz J, Velasquez O, Dixon K, Stone NE, Cox DR, Haussler D, Kent WJ, Furey T, Rogic S, Kennedy S, Jones S, Rosenthal A, Wen G, Schilhabel M, Gloeckner G, Nyakatura G, Siebert R, Schlegelberger B, Korenberg J, Chen XN, Fujiyama A, Hattori M, Toyoda A, Yada T, Park HS, Sakaki Y, Shimizu N, Asakawa S, Kawasaki K, Sasaki T, Shintani A, Shimizu A, Shibuya K, Kudoh J, Minoshima S, Ramser J, Seranski P, Hoff C, Poustka A, Reinhardt R, Lehrach H; International Human Genome Mapping Consortium. A physical map of the human genome. Nature 2001, 409, 934-941. [PubMed]
  • Meyer M, Brandl M, Sühnel J. Are guanine tetrads stabilized by bifurcated hydrogen bonds? J Phys Chem A 2001, 105, 8223-8225.
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  • Meyer M, Schneider C, Brandl M, Sühnel J. Cyclic adenine-, cytosine-, thymine- and mixed guanine-cytosine base tetrads in nucleic acids viewed from a quantum-chemical and force field perspective. J Phys Chem A 2001, 105, 11560-11573.
  • Meyer M, Steinke T, Brandl M, Sühnel J. Density functional study of guanine and uracil quartets and of guanine/metal ion complexes. J Comp Chem 2001, 22, 109-124.
  • Mühlig P, Klupsch T, Schell U, Hilgenfeld R. Investigation of the early stages of insulin crystallization by confocal laser scanning microscopy (CLSM). J Cryst Growth 2001, 232, 93-101.
  • Neumann T, Kirschstein SO, Camacho Gomez JA, Kittler L, Unger E. Determination of the net exchange rate of tubulin dimer in steady-state microtubules by fluorescence correlation spectroscopy. Biol Chem 2001, 382, 387-391. [PubMed]
  • Padilla-Nash HM, Heselmeyer-Haddad K, Wangsa D, Zhang H, Ghadimi BM, Macville M, Augustus M, Schröck E, Hilgenfeld E, Ried T. Jumping translocations are common in solid tumor cell lines and result in recurrent fusions of whole chromosome arms. Genes Chromosomes Cancer 2001, 30, 349-363. [PubMed]
  • Perret X, Parsons J, Viprey V, Reichwald K, Broughton WJ. [Repeat sequences of genomes of Rhizobium and Sinorhizobium meliloti: a comparative analysis]. Can J Microbiol 2001, 47, 548-558. [PubMed]
  • Platzer M, Glöckner G, Rump A, Taudien S, Schilhabel M, Rosenthal A. Die Genomanalyse am IMB Jena. Biospektrum 2001, 7, 262-264.
  • Preusser A, Briese L, Baur AS, Willbold D. Direct in vitro binding of full-length human immunodeficiency virus type 1 Nef protein to CD4 cytoplasmic domain. J Virol 2001, 75, 3960-3964. [PubMed]
  • Rau A, Hogg T, Marquardt R, Hilgenfeld R. A new lysozyme fold. Crystal structure of the muramidase from Streptomyces coelicolor at 1.65 Å resolution. J Biol Chem 2001, 276, 31994-31999. [PubMed]
  • Riboldi-Tunnicliffe A, König B, Jessen S, Weiss MS, Rahfeld J, Hacker J, Fischer G, Hilgenfeld R. Crystal structure of Mip, a prolylisomerase from Legionella pneumophila. Nat Struct Biol 2001, 8, 779-783. [PubMed]
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  • Rivero F, Dislich H, Glöckner G, Noegel AA. The Dictyostelium diccoideum family of Rho-related proteins. Nucleic Acids Res 2001, 29, 1068-1079. [PubMed]
  • Rump A, Kasper G, Hayes C, Wen G, Starke H, Liehr T, Lehmann R, Lagemann D, Rosenthal A. Complex arrangement of genes within a 220-kb region of double-duplicated DNA on human 2q37.1. Genomics 2001, 73, 50-55. [PubMed]
  • Schäfer B, Gemeinhardt H, Greulich KO. Direct microscopic observation of the time course of single DNA restriction reactions. Angew Chem Int Ed Engl 2001, 40, 4663-4666. [PubMed]
  • Scheller J, Gührs KH, Grosse F, Conrad U. Production of spider silk proteins in tobacco and potato. Nat Biotechnol 2001, 19, 573-577. [PubMed]
  • Schneider C, Brandl M, Sühnel J. Molecular dynamics simulation reveals conformational switching of water-mediated uracil-cytosine base pairs in an RNA duplex. J Mol Biol 2001, 305, 659-667. [PubMed]
  • Schub O, Rohaly G, Smith RW, Schneider A, Dehde S, Dornreiter I, Nasheuer HP. Multiple phosphorylation sites of DNA polymerase -primase cooperate to regulate the initiation of DNA replication in vitro. J Biol Chem 2001, 276, 38076-38083. [PubMed]
  • Serkina AV, Bushueva AM, Chestukhina GG, Gumpert J, Hoischen C, Kujau M, Shevelev AB. [Isolation of glutamylendopeptidase precursor from B. licheniformis and its processing in vitro]. Vopr Med Khim 2001, 47, 111-122. [PubMed]
  • Søe K, Dianov G, Nasheuer HP, Bohr VA, Grosse F, Stevnsner T. A human topoisomerase I cleavage complex is recognized by an additional human topoisomerase I molecule in vitro. 2001, 29, 3195-3203. [PubMed]
  • Stangler T, Mayr LM, Dingley AJ, Luge C, Willbold D. Sequence-specific 1H, 13C and 15N resonance assignments of human GABA receptor associated protein. J Biomol NMR 2001, 21, 183-184. [PubMed]
  • Stoyan T, Gloeckner G, Diekmann S, Carbon J. Multifunctional centromere binding factor 1 is essential for chromosome segregation in the human pathogenic yeast Candida glabrata. Mol Cell Biol 2001, 21, 4875-4888. [PubMed]
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  • Vogeley L, Palm GJ, Mesters JR, Hilgenfeld R. Conformational change of elongation factor Tu (EF-Tu) induced by antibiotic binding. Crystal structure of the complex between EF-Tu.GDP and aurodox. J Biol Chem 2001, 276, 17149-17155. [PubMed]
  • Webster G, Hilgenfeld R. An evolutionary computational approach to the phase problem in macromolecular X-Ray crystallography. Acta Crystallogr A 2001, 57, 351-358. [PubMed]
  • Weiss MS. Global indicators of X-ray data quality. J Appl Cryst 2001, 34, 130-135.
  • Weiss MS, Brandl M, Sühnel J, Pal D, Hilgenfeld R. More hydrogen bonds for the (structural) biologist. Trends Biochem Sci 2001, 26, 521-523. [PubMed]
  • Weiss MS, Sicker T, Djinovic-Carugo K, Hilgenfeld R. On the routine use of soft X-rays in macromolecular crystallography. Acta Crystallogr D Biol Crystallogr 2001, 57, 689-695. [PubMed]
  • Weiss MS, Sicker T, Hilgenfeld R. Soft X-rays, high redundancy and proper scaling: A new procedure for automated protein structure determination via SAS. Structure 2001, 9 , 771-777. [PubMed]
  • Wieland G, Hemmerich P, Koch M, Stoyan T, Hegemann J, Diekmann S. Determination of the binding constants of the centromere protein Cbf1 to all 16 centromer DNAs of Saccharomyces cerevisiae. Nucleic Acids Res 2001, 29, 1054-1060. [PubMed]
  • Wittstock G, Wilhelm T, Bahrs S, Steinrücke S. SECM feedback imaging of enzymatic activity on agglomerated microbeads. Electroanal 2001, 13, 669-675.
  • Zacharias M. Conformational analysis of DNA-trinucleotide-hairpin-loop structures using a continuum solvent model. Biophys J 2001, 80, 2350-2363. [PubMed]
  • Zhu W, Chan EK, Li J, Hemmerich P, Tan EM. Transcription activating property of autoantigen SG2NA and modulating effect of WD-40 repeats. Exp Cell Res 2001, 269, 312-321. [PubMed]
  • Zimmermann W, Broll H, Ehlers B, Buhk HJ, Rosenthal A, Goltz M. Genome sequence of bovine herpesvirus 4, a bovine Rhadinovirus, and identification of an origin of DNA replication. J Virol 2001, 75, 1186-1194. [PubMed]
 
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